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Antibody Linkers Selection Service


Fig 1. The Antibody Linkers Selection Service.

In the field of antibody - drug conjugates (ADCs) and bispecific antibodies, the selection of appropriate antibody linkers is crucial. CD ComputaBio offers a specialized antibody linkers selection service based on computational modeling. This service aims to assist researchers and pharmaceutical companies in choosing the most suitable linkers for their antibody - based projects, optimizing the performance, stability, and efficacy of the final constructs.

Importance of Linker Selection

For ADCs, the linker should be stable in circulation to prevent premature release of the cytotoxic drug, but also cleavable at the target site to deliver the drug effectively. In bispecific antibodies, the linker needs to maintain the proper orientation and flexibility of the connected antibody fragments to ensure correct binding to the two different antigens.

Antibody Linkers Selection Service

Customized Linker Design

CD ComputaBio offers customized linker design based on the specific requirements of the antibody and its intended application. Whether it is for a particular target antigen, a specific antibody format, or a desired pharmacokinetic profile, we can design linkers from scratch.

Linker - Antibody Compatibility Assessment

We assess the compatibility between the proposed linker and the antibody. This includes analyzing how the linker may interact with the antibody's amino acid residues, its effect on the antibody's folding and stability, and potential steric hindrance issues.

Linker Property Prediction

Our service predicts various properties of the linkers, such as their flexibility, rigidity, and solubility. These properties are crucial for determining how the linker will behave in different physiological environments. We can also predict the linker's susceptibility to enzymatic cleavage, which is important for ADCs where controlled drug release is desired.

High - Throughput Screening

CD ComputaBio uses computational modeling to perform high - throughput screening of a large library of linkers. This allows us to quickly identify potential candidates that meet the desired criteria. The screening process can be customized based on different parameters such as linker length, chemical composition, and cleavage mechanism.

Approaches of Antibody Linkers Selection Service

Docking Studies
Similar to antigen - antibody docking, we can perform docking simulations between the linker and the antibody. This helps in determining the optimal binding site on the antibody for the linker and understanding the geometric and chemical complementarity between them.
Sequence Alignment
Comparing the amino acid sequence of the antibody with known antibodies that have been successfully conjugated with linkers. This can give clues about potential linker attachment sites and regions that may be more or less tolerant to linker modification.

Our Algorithm

Amber

CHARMM

GROMACS

Advantages

Expertise in Antibody Biology

CD ComputaBio has a team of experts with in - depth knowledge of antibody biology. They understand the nuances of antibody structure, function, and antigen binding, which is essential.

Computational Resources

We have access to high - performance computing resources, which are necessary for running complex computational models and simulations.

Data - Driven Decision - Making

CD ComputaBio has amassed a large amount of data on antibody - linker interactions, both from in - house research and from the scientific literature.

Antibody linkers selection is a critical step in the development of antibody - drug conjugates. CD ComputaBio's antibody linkers selection service, with its diverse feature services, multiple approaches, advanced algorithms, and significant advantages, offers a comprehensive and efficient solution for choosing the most suitable linkers. By relying on computational modeling, we can accelerate the development of ADCs with improved efficacy and safety profiles.

FAQ

Can you customize the linker design according to our specific requirements?

Yes, we offer customized linker design services based on the specific requirements of the ADC. If the antibody has a unique binding site or the drug has particular chemical properties, we can design a linker that is optimized for that specific combination. Our experts can adjust the length, composition, and functional groups of the linker to achieve the desired properties.

How do you ensure the compatibility between the linker, antibody, and drug?

Our service includes an analysis of the compatibility between the linker, the antibody, and the drug. We consider factors such as steric hindrance, charge - charge interactions, and hydrophobic interactions. By evaluating these factors, we can ensure that the linker does not interfere with the antibody - antigen binding or the drug's activity.

How long does the linker selection process typically take?

In general, for a relatively simple system with sufficient existing data, the initial screening and analysis of potential linkers may take around 2 - 4 weeks. This includes running the computational models to predict linker properties and perform basic compatibility analyses. However, if the system is more complex, for example, if it involves a novel antibody or drug with unique properties, or if there is limited data available, the process may take longer, potentially up to 8 - 12 weeks or more.

What is the Antibody Linkers Selection Service?

The Antibody Linkers Selection Service offered by CD ComputaBio is a specialized service that utilizes computational modeling techniques to assist in the selection of appropriate antibody linkers. In antibody - drug conjugates (ADCs), linkers play a crucial role in connecting the antibody and the cytotoxic drug. Our service aims to optimize this selection process by predicting various properties of linkers, customizing linker designs, analyzing compatibility, and screening/optimizing linkers for the best performance in ADCs.
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